Inspired by Halmos (Naive Set Theory) . . .
For each of these three possible properties [reflexivity, symmetry, and transitivity], find a relation that does not have that property but does have the other two.
One can construct each of these relations and, in particular, a relation that is
symmetric and reflexive but not transitive:
$$R=\{(a,a),(a,b),(b,a),(b,b),(c,c),(b,c),(c,b)\}.$$
It is clearly not transitive since $(a,b)\in R$ and $(b,c)\in R$ whilst $(a,c)\notin R$. On the other hand, it is reflexive since $(x,x)\in R$ for all cases of $x$: $x=a$, $x=b$, and $x=c$. Likewise, it is symmetric since $(a,b)\in R$ and $(b,a)\in R$ and $(b,c)\in R$ and $(c,b)\in R$. However, this doesn't satisfy me.
Are there real-life examples of $R$?
In this question, I am asking if there are tangible and not directly mathematical examples of $R$: a relation that is reflexive and symmetric, but not transitive. For example, when dealing with relations which are symmetric, we could say that $R$ is equivalent to being married. Another common example is ancestry. If $xRy$ means $x$ is an ancestor of $y$, $R$ is transitive but neither symmetric nor reflexive.
I would like to see an example along these lines within the answer. Thank you.
My favorite example is synonymy: certainly any word is synonymous with itself, and if you squint you can imagine that if a word appears in the thesaurus entry for another, then the latter will symmetrically appear in the thesaurus entry for the former. But synonymy is not transitive.
However this and many other examples are special cases of vertices joined by edges in graphs which is a canonical example of Tolerance:
Tolerance relations are binary reflexive, symmetric but generally not transitive relations historically introduced by Poincare', who distinguished the mathematical continuum from the physical continuum, then studied by Halpern, and most notably the topologist Zeeman.
Recent surveys include:
Peters & Wasilewski's "Tolerance spaces: origins, theoretical aspects and applications" Info Sci 2012, and Sossinsky's "Tolerance Space Theory" Acta App Math 1986, which mentions these examples:
Metric space with distance between points less than $\epsilon$
Topological space with a fixed covering and 2 points both contained in one element of the cover
Vertices in the same simples of a simplicial complex
Vertices joined by an edge in an undirected graph
Sequences that differ by 1 (or 2, or 3) binary digits
Cosets in a group with nonempty intersection
An intersting textbook that discusses tolerances is Pirlot & Vincke's Semiorders, 1997.
Sossinsky's paper goes on to mention:
(i) tolerance spaces appear quite naturally in the most varied branches of mathematics;
(ii) the tolerance setting is very convenient for the use of many existing powerful mathematical tools;
(iii) only results 'within tolerance' are usually required in practical applications.
and that "tolerance, in a way, is a trick for avoiding the specific hazards of infinite-dimensional-function spaces, eg their local noncompactness; moreover, in a certain sense, in tolerance spaces, you can't have large finite dimensions"