As we know $\operatorname{Aut}(A_n)\cong \operatorname{Aut}(S_n)\cong S_n$ for $n\geq4$, $n\neq 6$ and $\operatorname{Aut}(A_6)\cong \operatorname{Aut}(S_6)\cong S_6\rtimes C_2$.
Is there any method to obtain an element $g$ in $S_n$ ($n\neq 6$) for $f\in \operatorname{Aut}(S_n)$ so that $f$ is the conjugation map by $g$?
Another problem is that if $H$ is subgroup of $A_6$ and $\sigma\in\operatorname{Aut}(A_6)$ then are the subgroups $H$ and $\sigma(H)$ conjugate in $S_6$? Also what can we say about $H$ and $\sigma(H)$ if $n\neq 6$?
For the first question, compute $f$ on the $n$-cycle $(12\dots n)$ to obtain $(a_{1} a_{2} \dots a_{n})$. Then compute $f$ on the $2$-cycle $(12)$ to obtain $(b_{1} b_{2})$. Now within the $a_{i}$ there are two consecutive ones (indices are taken modulo $n$) such that
Your $g$ is $$ 1 \mapsto a_{i}, 2 \mapsto a_{i+1}, \dots , n \mapsto a_{n+i-1}, $$ where here, too, indices are taken modulo $n$.
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Explanation Recall that $$ (12\dots n) = (1^{g} 2^{g} \dots n^{g}), $$ where $i^{g}$ indicates the image of $i$ under the permutation $g$. So if $f$ is the same thing as conjugation by $g$, computing the image of $(12\dots n)$, under $f$ will give you one of $$ (1^{g} 2^{g} \dots n^{g}) = (2^{g} \dots n^{g} 1^{g}) = (3^{g} \dots n^{g} 1^{g} 2^{g}) = \dots $$ To see what the images of $1$ under $g$ is, compute $f$ on $(12)$.