The answer for the special case when the squares are Pythagorean triple is yes. The Pythagorean triples are the case of the lowest $n$, namely $2$. Two Pythagorean triples can be combined to form a sum of $4$ squares as in $(3^2 + 4^2) + (5^2 + 12^2) = 5^2 + 13^2$. Combining (adding) Pythagorean triples, we can make a sum of squares with arbitrary $n$.
Question: What happens in the general case when the pairs of squares involved are not Pythagorean triples or when not all pairs are Pythagorean?
The answer is yes for (even) $n \geq 8$ and no for (even) $n \leq 7$.
If $n \geq 8$ then the sum of your $n$ squares is the sum of four squares by the Lagrange four square theorem. Now, if $n/2$ is greater than 4, you can complete your sum by adding enough terms equal to $0^2$.
For $4 \leq n \leq 7$ note that $7$ can be written as the sum of $n$ squares but cannot be written as the sum of $n/2$ squares.
For $2 \leq n \leq 3$ note that $5$ is the sum of $n$ squares but not the sum of $n/2$ squares.