If I understand correctly there exist artificial examples. Let P be a statement known to be independent of ZFC, such as CH, $g:\mathbb{N}\rightarrow\mathbb{N}$ be a function known to be uncomputable, such as the one related to halting problem. Define a function $f:\mathbb{N}\rightarrow\mathbb{N}$ as follows: if P holds then $f=0$; otherwise $f=g$. Then whether $f$ is computable would be independent of ZFC. My questions are:
Is there any natural example?
Actually this is what I initially wanted to ask: is there any provably ineffective result in number theory (here "effective" is synonym for "computable")? The Siegel's theorem leads to many ineffective results, but Generalized Riemann Hypothesis (GRH) implies effective version of those results. Virtually everyone believes GRH is provable, and hence Siegel's result actually is effective.
One standard example of a function whose complexity is wildly independent is the continuum pattern, or rather, patterns. These are the various sequences associated to the function $EXP:\kappa\mapsto 2^\kappa$ on infinite cardinals $\kappa$.
For our purposes it's enough to just look at the first bit of this pattern. Let $ind$ be the indexing function for cardinals, sending $\aleph_\alpha$ to $\alpha$, and consider the map $$f:m\mapsto ind(2^{\aleph_m}).$$ This part of the continuum pattern is already totally bizarre: it could be anything subject to the obvious rule that $x<f(x)\le f(x+1)$. Note that "$\le$" - $\mathsf{ZFC}$ can't even prove that cardinal exponentiation is injective!
The fact that arbitrarily much complexity can be coded into the continuum pattern is a useful trick in set theory - it lets us whip up wild models of $\mathsf{ZFC}+V=HOD$.