Given some (set sized) transitive model of ZFC, $M$ we can construct Hyper-$M$ as follows. We construct an ultrafilter $U$ on $Ord_M$ such that $(\exists \alpha.S = \{ \beta : \beta > \alpha \}) \implies S \in U$. Hyper-$M$ is then $M^{|Ord_M|}/U$ (by analogy with the name Hyperreals).
Note that Hyper-$M$ is an elementary extension of $M$, and moreover is contains an ordinal greater than every ordinal in $M$, namely $H = (0,1,2,\dots,\beta,\dots)/U$. This is because for any ordinal $\alpha = (\alpha, \alpha, \dots, \alpha, \dots)/U$, the set of indices $H_i > \alpha_i$ is equal to $\{ \beta : \beta > \alpha \} \in U$.
My question:
Is Hyper-$M$ isomorphic to some transitive model of ZFC? If not, how about an elementarily equivalent transitive model?
Building off the comments to the question, I think the following is the answer:
First, a quick fact:
The following are equivalent for a set model $M$ of ZFC:
$M$ is isomorphic to a transitive model of ZFC.
$M$ is well-founded.
$Ord^M$ is well-ordered with respect to $\in^M$.
For each $\alpha\in Ord^M$, $\{m\in M: m\in^M\alpha\}$ is well-ordered with respect to $\in^M$.
Clearly $(1)$ implies $(2)$, and from $(2)$ and the Mostowski collapse we get $(1)$. The equivalence between $(3)$ and $(4)$ is because any linear order all of whose proper initial segments are well-ordered is itself a well-order. $(2)$ clearly implies $(3)$, and from $(3)$ and thinking about rank in the cumulative hierarchy we get $(2)$.
With this in mind, you are ultimately asking:
This is ultimately addressed by the notion of completeness of an ultrafilter. An ultrafilter $\mathcal{W}$ on a set $I$ is $\kappa$-complete if for every $S\subseteq\mathcal{W}$ with $\vert S\vert<\kappa$ we have $\bigcap S\in\mathcal{W}$, that is, if $\mathcal{W}$ is closed under size-less-than-$\kappa$ intersections. Every ultrafilter is $\omega$-complete, and the first interesting situation occurs when we consider $\omega_1$-completeness (also called countable completeness). Here's the key observation:
Conversely, we have:
In combination with the "quick fact" above (hint: take $\mathcal{L}$ to be $Ord^M$) this tells us:
By a standard Zorn's lemma argument, we can cook up non-$\omega_1$-closed appropriate ultrafilters, so the answer to your question is no. Indeed, well-foundedness is hard to preserve: the existence of an $\omega_1$-complete (nonprincipal) ultrafilter on any set is equivalent to the existence of a measurable cardinal, which is a fairly powerful large cardinal axiom (the biggest of the smalls and the smallest of the bigs, really).