Let $V$ be a k-dimensional subspace of $(\mathbb{F}_2)^n$, such that vector $\vec{j}=(1,1,...,1) \in V$.
Standard linear algebra shows that it is possible to find a $(k-1)$-dimensional space $W$ such that $\langle \vec{j},W\rangle=V$. However, this choice is not unique.
Is there any "canonical" choice for $W$, i.e. one that does not depend on making certain positions special, like there is the orthogonal complement in the $\mathbb{R}$-case?
In case it matters, my parameters are $n=2058$, $k=52$ and all vectors in $V$ have even weight (so orthogonal complement is pointless).
Edit: clarification of what I mean with "without making certain positions special". Consider the action of $S_n$ as a permutation group on the positions of the vector space, and let $G\le S_n$ be the stabilizer of $V$ in that action. Then $G$ should also stabilize $W$, as in the orthogonal complement case. (Note that $G$ automatically stabilizes $\vec{j}$.) I'm unsure if such spaces exist in general, so a feasible algorithm to find one is also appreciated.
We denote $j = \begin{bmatrix} 1 & 1 & \dots & 1 \end{bmatrix}^T \in V$, where $V$ is a $k$-dimensional subspace of $\{0,1\}^n$.
Let us observe the case $2n = k$ (since $j \in V$, we know that $n$ is even) and $V = \mathop{\rm span}\{v_1,\dots,v_k\}$, where $v_i = e_{2i-1} + e_{2i}$. Here, vectors $e_i$ denote the vectors of the standard canonical base in $\mathbb{R}^n$, i.e., the columns of the identity matrix.
We define $W_i := \mathop{\rm span}\left(\{v_1,\dots,v_k\} \setminus \{v_i\}\right)$ and get $k$ candidates for the space $W$ (these are obviously not the only ones; just the ones simplest to define). Honestly, I see no reason why to pick any one of them (or any of those not among $W_i$) over the others, so I'd say the answer to your question is "no".
A similar example could be coined for your $n$ and $k$, with $v_i$ being sums of $38$ or $40$ canonical vectors $e_l$.
Orthogonality is a powerful property, making such subspaces a very interesting choice. Taking that advantage away, your special pick may only depend on some other desirable property, so you might want to check if you have any.