Let $M$ be a Riemannian manifold, and define the Sobolev spaces $H^k(M)$ to be the set of distributions $f$ on $M$ such that $Pf \in L^2(M)$ for all differential operators $P$ on $M$ of order less than or equal to $k$ with smooth coefficients.
If $F : M\rightarrow N$ is a diffeomorphism, must it hold that $H^k(M)$ and $H^k(N)$ are linearly isomorphic? If $F$ and all its derivatives are bounded, then composition with $F$ gives the desired isomorphism. Is there still a way to produce an isomorphism if this is not the case?
Of course, there is always an (abstract) isomorphism between two separable Hilbert spaces. For the question to be interesting, we should ask for a concrete isomorphism in terms of $F$.
I am skeptical about the idea of "fixing" the composition operator by putting multiplication on top of it. This sort of thing can work for Lebesgue spaces, but getting the desired Sobolev norm with multiplication is unlikely.
I suspect that if the composition operator does not work, there is no natural isomorphism. As you might know already, composition does work without boundedness of derivatives in one exceptional case: for $k=1$ in two dimensions. Any conformal or even quasiconformal map between surfaces of finite area induces an isomorphism of $H^1$ by composition. (The finiteness of area is needed only for the zero-order term.)