The series is $$\sum_{k=1}^\infty (-1)^k\left[ k\ln\left(\frac{k^4+2k^3+k^2}{k^4+2k^3+3k^2+2k+2}\right)+\ln\left(\frac{k^2+2k+1}{k^2+1}\right) \right] $$ You won't believe it: this has a closed form! It's the beautiful $$4\coth^{-1}(e^\pi)$$ and Wolfram agrees.
By the way, I tried to prove it: the arguments of the $\ln$'s all factor, and with lots of simplifications the summand inside the brackets reduces to $$[\ 2k\ln(k)+2(k+1)\ln(k+1)-(k+1)\ln(k^2+1)-k\ln(k^2+2k+2)\ ] $$ With this new representation and some struggle (it's not difficult, just some algebraic manipulations), I managed to equate the original sum to the sum $$\sum_{k=1}^\infty (-1)^k\left[\ -2k \tanh^{-1}\left(\frac{k+1}{k^2+k+1}\right)- (k+1)\ln\left(\frac{k^2+1}{(k+1)^2}\right) \right] $$ but from here, I couldn't proceed any further. At this point, I even think this made it only worse.
In addition, notice that $$4\coth^{-1}(e^\pi)=2\ln\left(\frac{e^\pi+1}{e^\pi-1}\right)=2\ln\left(\coth\left(\frac\pi2\right) \right)$$
which follows just from the definition of inverse $\coth$, and maybe this is a bit easier to work with.
If anyone has any idea on how to attack this monster, or comes up with a full solution, please share, I look forward to read it.
Without loss of generality, we write the partial sum as:
$$S_{2N}=\sum_{k=1}^{2N}(-1)^k[\ 2k\ln(k)+2(k+1)\ln(k+1)-(k+1)\ln(k^2+1)-k\ln(k^2+2k+2)\ ] $$
and $S_{2N+1}$ can be treated similarly. Next, we group $S_{2N}$ into three parts:
$$S_{2N}=A+B+C $$
where
$$\begin{align}A&=\sum_{k=1}^{2N}(-1)^k[\ 2k\ln(k)+2(k+1)\ln(k+1)\ ]=2(2N+1)\ln(2N+1)\\ \\ B&=-\sum_{k=1}^{2N}(-1)^k[\ (k-1)\ln(k^2+1) +k\ln\left((k+1)^2+1\right)\ ]=-2N\ln\left((2N+1)^2+1\right)\\ \\ C&=-2\sum_{k=0}^{2N}(-1)^k\ln(k^2+1)\end{align}$$
For $C$, we use Abel-Plana formula for alternating sums (derivations can be found in my old post)
$$\begin{align}\boxed{\sum_{k=0}^{2N} (-1)^kf(k)=\frac{f(0)+f(2N)}{2}-\Im\int_0^\infty \frac{f(it)}{\sinh(\pi t)}dt\\ ~~~~~~~~~~~~~~~~~~~~~~~+\sum_{s=1}^m\frac{B_{2s}}{(2s)!}(4^s-1)f^{(2s-1)}(x)\bigg|_{x=2N}+\hat{R_3}}\tag{1}\end{align}$$
where $f(k)=\ln(k^2+1)$, we get
$$C=-\ln\left( (2N)^2+1\right)+2\int_1^\infty \frac{\pi}{\sinh(\pi t)}dt+\sum_{s=1}^m\frac{B_{2s}}{(2s)!}(4^s-1)f^{(2s-1)}(x)\bigg|_{x=2N}+\hat{R_3}$$
Now, we put $A, B, C$ together,
$$\begin{align}S_{2N}&=2(2N+1)\ln(2N+1)-2N\ln\left((2N+1)^2+1\right)-\ln\left( (2N)^2+1\right)\\ \\ &+2\int_1^\infty \frac{\pi}{\sinh(\pi t)}dt+\sum_{s=1}^m\frac{B_{2s}}{(2s)!}(4^s-1)f^{(2s-1)}(x)\bigg|_{x=2N}+\hat{R_3}\end{align}\tag{2}$$
Take the limit for eq.(2), and note that
$$\lim_{N\to\infty} 2(2N+1)\ln(2N+1)-2N\ln\left((2N+1)^2+1\right)-\ln\left( (2N)^2+1\right)=0$$
and
$$\lim_{N\to\infty} \left[\sum_{s=1}^m\frac{B_{2s}}{(2s)!}(4^s-1)f^{(2s-1)}(x)\bigg|_{x=2N}+\hat{R_3}\right]=0\tag{3}$$
Therefore,
$$\boxed{~S=\lim_{N\to\infty}S_{2N}=2\int_1^\infty \frac{\pi}{\sinh(\pi t)}dt=4\coth^{-1}(e^\pi)~~}$$
Remarks:
For eq.(3), $m\ge1$ is some arbitrary interger, i.e, we set $m=1$
$$f'(2N)=\frac{4N}{1+4N^2}\longrightarrow 0$$
For the tail part, $\hat{R_3}=2\hat{R}(n=N)-\hat{R}(n=2N)$, and
$$\hat{R}(n)=-\Im\int_0^\infty f''(n+i\theta y)\frac{y^2}{e^{2\pi y}-1}dy$$
where $\theta\in (0,1)$, and plug in $f(x)=\ln(1+x^2)$
$$\Im f''(N+i\theta y)=\frac{2(\theta y-1)N}{(N^2+(\theta y-1)^2)^2}+\frac{2(\theta y+1)N}{(N^2+(\theta y+1)^2)^2}\le \frac{4\theta y}{N^3}$$
Since the integral $\int_0^\infty \frac{y^3}{e^{2\pi y}-1}dy$ is convergent, hence,
$$\hat{R_3}\propto\hat{R}(N)\propto \frac1{N^3}\longrightarrow 0$$