I just need some references which studies examples of skew adjoint differential operators generating unitary strongly continuous groups of operators, and its applications to partial differential equations.
The example I know is the differential operator defined on the hilbert space $H=L^2(\mathbb{R})$ by $$Af=f'$$, which has as domain $$D(A)=\{f \in L^2(\mathbb{R}), absolutely \ continuous, \ with \ f'\in L^2(\mathbb{R}) \}.$$
This operator generates a strongly continuous unitary group: $$(U(t)f)=f(t+s).$$ By unitary I mean $U(t)^{-1}=U(t)^*$. By a Stone's Theorem, this implies that $A$ must be skew adjoint.
You can take any self-adjoint operator and multiply it by $i$. Example: $i\Delta$ generates the Schrödinger equation for a free particle (the potential $V$ is identically zero). The wave equation $u_{tt}=c^2u_{xx}$ can also be interpreted in this way, by considering it as evolution of $(u,cu_x)$ in phase space: the generating operator is $\begin{pmatrix} 0 & c\frac{d}{dx} \\ c\frac{d}{dx} & 0\end{pmatrix}$, which is skew-adjoint.
Reference: Mathematical Methods in Quantum Mechanics by Gerald Teschl: very readable and free to download. Or pretty much any PDE book with "Hamiltonian" or "quantum mechanics" in it.