I have following problem:
a camera detects 3 points with 3D coordinates, and I know all those points are on a ellipse. Additionally I know length of the major and minor axis of the ellipse. Is it possible from that information to calculate the center of the ellipse? I am kind of lost how to do that with ellipses.
First you can identify the plane containing the three points. The center will lie in that plane. You can rotate to make it a $2d$ problem if needed. Alternatively you can in most cases project it onto the $xy$ plane.
Next, you can try to use the reflective properties of an ellipse. If $F_1$ and $F_2$ are the foci, and the three points are $P_1$, $P_2$, and $P_3$, then $d(P_i, F_1) + d(P_i, F_2)$ is a constant, which you can find from the major and minor axes. That gives you three equations.
Edited to add Since you have the major and minor axes you can compute how far apart the foci are. That gives you another condition, which should be enough to solve.