Find two subgroups of $S_4$ that have order 4, such that they are not isomorphic to each other.
Is there a convenient way to obtain the answer instead of writing out the permutations of $S_4$? How can two subgroups of $S_4$ be non-isomorphic to each other? (Since both of them are abelian... Perhaps one is cyclic and the other not?)
The approach is right. For the non-cyclic subgroup, try the group generated by $(12)$ and $(34)$.
It should be easy to produce a cyclic subgroup of order $4$.