I'm reading this text:
$$\int_0^1 \sqrt{1 - x^2} \cdot dx$$
Why isn't the above integral the right half of a circle? Why did they show the equation of $y^2$? Was the point of that just to show that it's a circle? But that just confuses people because they don't really explain why it's just 1 quarter of a circle. I guess y cannot be negative? But $y$ can be negative in the $y^2$ equation.

The question is asking you to evaluate the integral $$\int_{0}^{1} \sqrt{1-x^2}\,\mathrm{d}x$$ by interpreting this integral as an area. In order to do this, we need to understand the shape of the region being enclosed. To do this, we might reason as follows:
Since the limits of the integral are $0$ and $1$, the area we are interested lives on the interval $[0,1]$. That is the area pictured here:
Next, the integral is the area enclosed between the curve $y = \sqrt{1+x^2}$ and the $x$-axis. Note that the square root function is, by definition, the positive square root. This implies that when $\sqrt{x}$ is defined, it is nonnegative. In other words, the curve that bounds the region of interest, i.e. $y = \sqrt{1-x^2}$, lives only above the $x$-axis. It doesn't extend below the $x$-axis at all. Hence we are interested in the region that is above the $x$-axis and below the curve.
Finally, using a graphing utility, this looks like a semicircle above the $x$-axis:
If we are being careful (as we ought to be), we should check this: recall that that a circle centered at the point $(h,k)$ with radius $r$ is described by the equation $$ (x-h)^2 + (y-k)^2 = r^2. $$ Since the region that we are interested in looks like a semicircle of radius 1 centered at the origin, this should be the region bounded by the curve $$ x^2 + y^2 = 1. $$ Solving for $y$, we get $$ y^2 = 1-x^2 \implies y = \pm \sqrt{1-x^2}.$$ We are interested in the region above the $x$-axis and below the line $y = \sqrt{1-x^2}$. The above argument shows that this upper bound is a semicircle. Yay!
Intersecting the blue and red regions above, we get the quarter circle, which has area $\frac{\pi}{4}$.