How prove
$$ \sum\limits_{n=1}^{\infty}\frac{1}{n}\left(\frac{1}{n+1}-\frac{1}{n+2}+\frac{1}{n+3}-\cdots\right)^{2}=\frac{\pi^2\ln2}{6}-\frac{\ln^32}{3}-\frac{3\zeta(3)}{4} $$
$\mathbf {My\,Attempt:}$
I put $$\left(\frac{1}{n+1}-\frac{1}{n+2}+\frac{1}{n+3}-\cdots\right) = \int_0^1 \frac{x^n}{1+x}dx$$ and hence
$$\left(\frac{1}{n+1}-\frac{1}{n+2}+\frac{1}{n+3}-\cdots\right)^2=\int_0^1\int_0^1 \frac{(xy)^n}{(1+x)(1+y)}dxdy$$
So, the sum equals $$\int_0^1\int_0^1 \frac{1}{(1+x)(1+y)}\left(\sum\limits_{n=1}^{\infty} \frac{(xy)^n}{n}\right)dxdy=-\int_0^1\int_0^1 \frac{\ln(1-xy)}{(1+x)(1+y)}dxdy$$
The inner integral is
$$\int_0^1 \frac{\ln(1-xy)}{1+y}dy=\mathrm{Li}_2 \left(\frac{1-x}{1+x}\right)-\mathrm{Li}_2\left(\frac{1}{1+x}\right)+\ln(1-x)\ln\left(\frac{2x}{1+x}\right)$$
The remaining stuff is a lot of calculations.
$\text{Any hint for a better method or idea?}$
The second round of integration is completed with use of \begin{align} I_{1} &= \int_{0}^{1} \mathrm{Li}_2 \left(\frac{1-x}{1+x}\right) \, \frac{dx}{1+x} = \zeta(2) \, \ln 2 - \frac{5}{8} \, \zeta(3) \\ I_{2} &= \int_{0}^{1} \mathrm{Li}_2 \left(\frac{1}{1+x}\right) \, \frac{dx}{1+x} = \frac{\zeta(3)}{8} + \frac{\zeta(2) \, \ln 2}{2} - \frac{\ln^{3}2}{6} \\ I_{3} &= \int_{0}^{1} \ln(1-x) \, \ln\left(\frac{2 x}{1+x}\right) \, \frac{dx}{1+x} = \frac{3 \, \zeta(3)}{2} + \frac{\ln^{3}2}{6} - \frac{3}{2} \, \zeta(2) \, \ln 2. \end{align}
With these values then: \begin{align} S &= \sum_{n=1}^{\infty} \frac{1}{n} \, \left( \sum_{k=1}^{\infty} \frac{(-1)^{k-1}}{k+n} \right)^{2} \\ &= \sum_{n=1}^{\infty} \frac{1}{n} \, \int_{0}^{1} \int_{0}^{1} \frac{(u t)^{n} \, du \, dt}{(1+u) (1+t)} \\ &= - \int_{0}^{1} \int_{0}^{1} \frac{\ln(1- u t) \, du \, dt}{(1+u)(1+t)} \\ &= - \int_{0}^{1} \left( \mathrm{Li}_2 \left(\frac{1-t}{1+t}\right)-\mathrm{Li}_2\left(\frac{1}{1+t}\right)+\ln(1-t)\ln\left(\frac{2t}{1+t}\right) \right) \, \frac{dt}{1+t} \\ &= - \left[ \left(\zeta(2) \, \ln 2 - \frac{5}{8} \, \zeta(3) \right) - \left(\frac{\zeta(3)}{8} + \frac{\zeta(2) \, \ln 2}{2} - \frac{\ln^{3}2}{6} \right) \right. \\ & \hspace{20mm} \left. + \left(\frac{3 \, \zeta(3)}{2} + \frac{\ln^{3}2}{6} - \frac{3}{2} \, \zeta(2) \, \ln 2 \right) \right] \\ &= \zeta(2) \, \ln 2 - \frac{3 \, \zeta(3)}{4} - \frac{\ln^{3}2}{3}. \end{align}
This leads to saying $$ \sum\limits_{n=1}^{\infty}\frac{1}{n}\left(\frac{1}{n+1}-\frac{1}{n+2}+\frac{1}{n+3}-\cdots\right)^{2}= \zeta(2)\ln 2 -\frac{3\zeta(3)}{4} - \frac{\ln^{3}2}{3}.$$