I am reading the book "A Friendly Introduction To Mathematical Logic". In one of the proofs they use induction, but I am not sure how this induction step is done. Could you please help me?
First I will post a definition:
Then I will post the proof with the induction step, I have highlighted this in red:

Could you please tell me how the induction step is done? I don't see why we have that $\gamma \in \Gamma$ is an element of C?

For the second question, you have to understand that $\Gamma$ is just a set of formulas (which you can imagine as the premises of your rule of inference).
For the first question, the idea is to do induction on the structure of the formulas in $\Sigma$. Remember that whenever you want to prove some property for an inductively defined set (as is the case for you set $\Sigma$ of deductions), you first prove the property for the base objects of the set (in your case, the logical and nonlogical axioms), and then move on to the objects generated by the production rules of the inductive set (that is, the rules that take elements in the set and form new elements that are still in the set, in your case all the possible inference rules, where the premises are the initial object). This are all the ways that an object can be created according to the inductive definition, so it follows that the property holds for the entire set.
Now, for the inductive step, an inductively generated object in $\Sigma$ is going to be of the form $(\Gamma, \phi)$. Your inductive hypothesis becomes $\Gamma \subset C$ (as always, it says that the inputs to the production rule satisfy the property you want to prove). Remember $\Gamma$ is just a set of formulas. But now by the third point of the definition of $C$, $\phi$ is in $C$, and you are done.
It can take a bit of time to get used to structural induction, so do not worry