Let's a call a directed simple graph $G$ on $n$ labelled vertices good if every vertex has outdegree 1 and, when considered as if it were undirected, it is connected. How many good graphs of size $n$ are there?
Here's my work so far. Let's call this number $T(n)$. Clearly, $T(2) = 1$: there's only the loop on two vertices.

We also have that $T(3) = 8$. We can count them using the following argument: let's call a possible shape a directed simple graph on $n$ unlabelled vertices which is good. For $n = 3$ we have the following shapes:

There are $3!$ labelled good graphs of the first shape: fix the outside vertex in 3 possible ways, then fix the loop in two possible ways. There are also $\frac{3!}{3}$ labelled good graphs of the second shape: it's simply the number of cycles on 3 elements. So in total we have: $$T(3) = 3! + \frac{3!}{3} = 8\text{.}$$
We also know that $T(4) = 78$. Let's list all possible shapes:

From top left to bottom right, it's easy to check that we have $4!$ labelled good graphs of the first shape, $2\cdot {4 \choose 2}$ of the second, $2\cdot {4 \choose 2}$ of the third, $4!$ of the fourth and $\frac{4!}{4}$ of the last. In total: $$T(4) = 4! + \left(2\cdot {4 \choose 2} + 2\cdot {4 \choose 2}\right) + 4! + \frac{4!}{4} = 3\cdot 4! + \frac{4!}{4}\text{.}$$
I think that $T(5) = 884$, but I won't draw all possible shapes or count their labelings for brevity.
I computed $T(5)$ again, and now I get 944. This also invalidates the following conjecture.
CONJECTURE [DISPROVEN]: I'm conjecturing that there's a simple-ish formula for $T(n)$. It's something like $$T(n) = (2^{n-2} - 1) \cdot n! + \frac{n!}{n} + S(n)$$ where $S(n)$ is some function I currently don't understand such that $S(2) = S(3) = S(4) = 0$, while $S(5) = 5\cdot 4$.
My solution does not agree with your answer for $T(5)$, but let's give it a try anyway . . .
To construct such a graph on $n$ vertices, consider the vertices with indegree $0$. If there are none of these then the graph is a (directed) cycle, and there are $(n-1)!$ possibilities. If there are $k$ specified vertices with indegree $0$, then we obtain our graph by choosing a graph of the required type on $n-k$ vertices, then deciding which of these $n-k$ vertices are to be the targets of the edges from the $k$ vertices of indegree $0$. The number of possibilities is $T(n-k)(n-k)^k$. Now the maximum value of $k$ is $n-2$ (can't be $n-1$ because then the remaining vertex would have to be adjacent to itself, which you do not allow). Therefore, by inclusion/exclusion, we have $$T(n)=(n-1)!+\sum_{k=1}^{n-2}(-1)^{k-1}\!\!\binom nk T(n-k)(n-k)^k\ .$$ The initial value is $T(2)=1$, and for $n=3,4,5$ this gives $8,78,944$.
My results seem to match OEIS A000435, though I can't see any connection with your problem.
Comments please!