problem
I have the following system of differential equations; $$ \frac{dx}{dt} = y \tag{1}\label{1}\\ $$ $$ \frac{dy}{dt} = -\lambda^2 x -A \tag{2} \label{2} $$ where $\lambda$ and $A$ values are known values, we also further have the following initial condition values; $$ x_0=x(0) = 0.5 \\ y_0=y(0) =\left. \frac{dx}{dt} \right\vert_{x=0} = 0.25 $$ 1)How do I solve this system using RK4 method?
My attempt
According to RK4 method we get \begin{aligned} x_{n+1}&=x_{n}+{\frac {1}{6}}h\left(k_{1}+2k_{2}+2k_{3}+k_{4}\right),\\ t_{n+1}&=t_{n}+h \end{aligned} where \begin{aligned}k_{1}&=\ y_{n},\\k_{2}&=\ y_{n}+h{\frac {k_{1}}{2}},\\k_{3}&=\ y_{n}+h{\frac {k_{2}}{2}},\\k_{4}&=\ y_{n}+hk_{3}.\end{aligned}
2)After this, should I take $x_n$ or $x_{n+1}$ value for calculating $\eqref{2}$?
3)How do I use matrices to solve this system?
This question gets often asked. I'd like to speculate that there are 3 stages to understanding numerical ODE methods of the Runge-Kutta variety:
There appears to be a mental block to the idea to put all components of the system into one flat vector and then treat that vector like a scalar (in this context), also separating the numerical method from the dynamical model. I think that to overcome this block seems to be a short period in the learning curve. I believe that this is the reason that the example code in compendiums like wikipedia, rosetta-code etc. is mostly geared to the scalar case, phase 1 will not yet reliably understand the multi-component case and phase 3 knows that, up to some trivial overhead, the same code structure can be used, and the scalar-case code is a little more compact to write down.
Some links that contain the treatment of second order DE or systems of DE (like mechanical assemblages, celestial systems, ...) using the RK4 method
Applying the vectorized RK4 method to a first-order system constructed from a higher-order equation
Applying RK4 to the first-order system component-wise
Using the second-order structure of the equation or system
https://math.stackexchange.com/questions/2615672/solve-fourth-order-ode-using-fourth-order-runge-kutta-method,2-body gravity simulation with partitioned RK4 code