Consider a cone centered about the positive z axis with its vertex at origin,a $90^{\circ}$ angle at its vertex,topped by a sphere of radius $6$.Compute the volume of region bounded by sphere and cone.
My problem:I need help about the limits of integration in spherical coordinates.
Thanks.

Here's a way to determine the limits. Given the cone's angle, its equation is $x^2+y^2=z^2$. assuming the sphere is centered at the origin, its equation is $x^2+y^2+z^2=R^2$, with $R=6$
In cone-sphere problems, remember that the cone extends forever, but the sphere is bounded. On the other hand, the cone starts as a point. If you take z-slices of the volume, it starts off as a single point (the apex of the cone), but widens thereon.
The slices are essentially circles $x^2+y^2=z^2$ for a fixed 'z'. However, beyond $z=3\sqrt{2}$, the slice at which the cone intersects the sphere, the outer limit is determined by the sphere. They are still bounded by circles, but of radius $\sqrt{R^2-z^2}$.
This should be enough information for you to find the limits.
Edited to add: If you work through, your integral will split into two integrals.
$$ \int_{z=0}^{3\sqrt{2}} \int_{r=0}^{z} \int_{\theta=0}^{2\pi} r d\theta dr dz + \int_{z=3\sqrt{2}}^{6} \int_{r=0}^{\sqrt{6^2-z^2}} \int_{\theta=0}^{2\pi} r d\theta dr dz $$
ETA2: In spherical,
$$ \int_{\theta=0}^{2\pi} \int_{\phi=0}^{\pi/4} \int_{r=0}^{6} r^2 \sin\phi dr d\phi d\theta $$