I was finding the area below the x-axis and above $y = x^2 - 4x$. My outcome was a negative number (fair enough, it's under the x-axis), but wolframalpha for instance gives me a positive number (I get the same number but negative) which one is correct?
Negative area below x-axis and above $f(x)$
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Area is always positive, so you probably have counted integral $\int^b_a (y(x) - 0)dx$ but have to count $\int^b_a (0 - y(x))dx$ instead. To decide which sign to use for a function while counting area, you have to reason as follows.
If you have two functions $f(x)$ and $g(x)$ and need to count area between $f(x)$ and $g(x)$ from $a$ to $b$ $(a,b \in \mathbb R)$, then you may draw an approximate graph and see which of inequations points $(x,y)$ your area match: $y \leq f(x)$ means that $f(x)$ should be with sign $+$, as $f(x)$ is a minuend here. Similarly, $y \geq f(x) \Rightarrow f(x)$ should be with $-$, as $f(x)$ is a subtrahend here. $g(x)$ would have an opposite sign.
Consider that the functions may intersect repeatedly on $[a,b]$, in such case you have to define the area unambiguously.
An area is always positive, occasionally an integral is negative. It depends on whether you want the area or the value of the integral.