I have the following recurrence:
$r_n = 4r_{n-1} + 6r_{n-2} \text{ where } r_0 = 1 \text{ and } r_1 = 3$
Next, I write my generating function, $R(x)$:
$$ \begin{align} R(x)*(1 - 4x - 6x^2) &= r_0 + (r_0 -4*r_1)x + 0*x^2 + ...\\ R(x)*(1 - 4x - 6x^2) &= 1 + (1 - 4*3)x = 1 - 11x \end{align} $$
Then, I find my roots...and they are ridiculous. I've done it 4 times now, and I'm convinced my error lies in the setup.
Either way, I wind up with the following generating function, which is wrong at $n=1$ and thereafter, but seems to be off by a factor of $-5$ at $n=1$ and $11$ at $n=2$, yielding $\{1,-15,66,...\}$ (so there seems to be some correspondence...):
$$ (\frac{1}{2} + \frac{3}{2\sqrt{10}}) \sum_{n=0}^{\infty}(\frac{6}{2-\sqrt{10}})^n x^n + (\frac{1}{2} - \frac{3}{2\sqrt{10}})\sum_{n=0}^{\infty}(\frac{6}{2+\sqrt{10}})^n $$
I'm not sure where the mistake is. I am pretty sure about the roots (inverse of the coefficients in the sums) at least (maybe there is some other error, but I double checked them with Wolfram Alpha)...
Where might I be going wrong?
More generally, suppose $r_n = ar_{n-1} + br_{n-2} $ with $r_0$ and $r_1$ given.
Let $R(x) =\sum_{n=0}^{\infty} r_n x^n $.
Then
$\begin{array}\\ xR(x) &=x\sum_{n=0}^{\infty} r_n x^n\\ &=\sum_{n=0}^{\infty} r_n x^{n+1}\\ &=\sum_{n=1}^{\infty} r_{n-1} x^{n}\\ \end{array} $
and
$\begin{array}\\ x^2R(x) &=x^2\sum_{n=0}^{\infty} r_n x^n\\ &=\sum_{n=0}^{\infty} r_n x^{n++2}\\ &=\sum_{n=2}^{\infty} r_{n-2} x^{n}\\ \end{array} $
Therefore
$\begin{array}\\ R(x)-axR(x)-bx^2R(x) &=\sum_{n=0}^{\infty} r_n x^n -a\sum_{n=1}^{\infty} r_{n-1} x^{n} -b\sum_{n=2}^{\infty} r_{n-2} x^{n}\\ &=(r_0+r_1x+\sum_{n=2}^{\infty} r_n x^n) -a(r_0x+\sum_{n=2}^{\infty} r_{n-1} x^{n}) -b\sum_{n=2}^{\infty} r_{n-2} x^{n}\\ &=r_0+r_1x-ar_0x+\sum_{n=2}^{\infty} x^n(r_n-ar_{n-1}-br_{n-2})\\ &=r_0+x(r_1-ar_0) \qquad\text{since }r_n-ar_{n-1}-br_{n-2}=0\\ \text{or}\\ R(x)(1-ax-bx^2) &=r_0+x(r_1-ar_0)\\ \text{or}\\ R(x) &=\dfrac{r_0+x(r_1-ar_0)}{1-ax-bx^2}\\ \end{array} $
Write $1-ax-bx^2 =(1-ux)(1-vx) $, then use partial fractions to get $R(x)$.
(added later)
We have
$\begin{array}\\ R(x) &=\dfrac{r_0+x(r_1-ar_0)}{1-ax-bx^2}\\ &=\dfrac{p+xq}{(1-ux)(1-vx)} \qquad\text{where } p = r_0, q = r_1-ar_0\\ &=\dfrac{p+qx}{u-v}\left(-\dfrac{v}{1-v x}+\dfrac{u}{1-u x}\right)\\ &=\dfrac{p}{u-v}\left(-\dfrac{v}{1-v x}+\dfrac{u}{1-u x}\right) +\dfrac{qx}{u-v}\left(-\dfrac{v}{1-v x}+\dfrac{u}{1-u x}\right)\\ \end{array} $
We have $\dfrac{u}{1-u x} =u\sum_{n=0}^{\infty} u^nx^n $ and similarly for $v$. This will enable you to get the $r_n$.
(end of addition)
This generalizes immediately to a general linear recurrence, with the usual caveats about repeated roots.
As is often the case in my answers, absolutely nothing here is original.