I'm learning about blowups in Algebraic Geometry, and am having trouble understanding how to apply them to desingularise varieties.
To illustrate my confusion, I will use the first example from these notes. While I have linked the notes, I will develop everything we need here, in my own words.
Definition
Let $\mathbb{A}^n$ be an affine space. Define $$ B_0\mathbb{A}^n = \{(x, l)\in \mathbb{A}^n\times \mathbb{P}^{n-1} : x \in l\}, $$ and let $\pi :B_0\mathbb{A}^n\to \mathbb{A}^n$ be the projection onto $\mathbb{A}^n$. For an affine variety $X \subseteq \mathbb{A}^n$, let $B_0X = \overline{\pi^{-1}(X\setminus\{0\})}$, where the closure is in the topological space $\mathbb{A}^n \times \mathbb{P}^{n-1}$, defined as a subspace of $\mathbb{P}^n \times \mathbb{P}^{n-1}$ via the Segre embedding.
Example
This is the first example from the notes linked above. I will restate their argument, and then explain my confusion.
Consider the affine variety $X = \mathcal{V}(x^2 - y^2) \subseteq \mathbb{A}^2$. We would like to find $B_0X$. Firstly, we have $$ \pi^{-1}(X \setminus \{0\}) = \{((x, y), [a:b]) \in \mathbb{A}^2\times\mathbb{P}^1: ay = bx, x^2 = y^2, (x,y) \neq(0,0)\}. $$
Let $\mathbb{A}_a$ be the affine chart with $a \neq 0$. In particular, $$ \mathbb{A}_a = \{((x,y),[a:b]) \in \mathbb{A}^2 \times \mathbb{P}^1 : a \neq 0\}. $$ We may assume that $a = 1$ so that $$ \mathbb{A}_a = \{((x,y),[1:b]) \in \mathbb{A}^2 \times \mathbb{P}^1\}. $$
Then it is easy to see that $$ \pi^{-1}(X\setminus \{0\})\cap \mathbb{A}_a = \{((x,bx),[1:b]) : b^2=1, x \neq 0\}, $$ and this is isomorphic$^1$ to $$ \{(x, x, 1) : x \in k^*\} \cup \{(x, -x, -1): x \in k^*\} \subseteq \mathbb{A}^3. $$ Clearly the closure in $\mathbb{A}^3$ is $$ \mathcal{V}(y - x, z-1) \cup \mathcal{V}(y + x, z + 1), $$ so we have$^2$ $$ B_0X = \mathcal{V}(y - x, z-1) \cup \mathcal{V}(y + x, z + 1). $$
My confusion(s)
There are two steps in this argument that seem unjustified to me. I will list them here, corresponding to the citations above.
Why can we make the identification $(x, y, t) \mapsto ((x,y), [1:t])$? Just because they have the same underlying set, $k^3$, doesn't necessarily mean they will have the same Zariski topology.
All we have shown is that the closure of $\pi^{-1}(X\setminus \{0\}) \cap \mathbb{A}_a$ in $\mathbb{A}_a$ is isomorphic to $\mathcal{V}(y - x, z-1) \cup \mathcal{V}(y + x, z + 1)$. Why does this tell us the closure of $\pi^{-1}(X\setminus \{0\})$ in $\mathbb{A}^2 \times \mathbb{P}^1$? I am able to show in this case that indeed the closure does lie in $\mathbb{A}_a$, but I don't see why this should be the case in general.
Any help in understanding either of these would be very much appreciated.
Next, we have that $\Bbb A^n\times\Bbb A^m \cong \Bbb A^{n+m}$ for any $n,m$, where we mean a product of varieties, not a product of topological spaces. While you would be correct that the product of topological spaces $\Bbb A^n\times\Bbb A^m$ is not isomorphic as a topological space to $\Bbb A^{n+m}$, the product operation in varieties is a little more subtle: it does make this isomorphism work as varieties, and that's what's being used here.