Given a matrix $X$ which has the following form: $\begin{bmatrix} 0 & A \\ 0 & 0 \end{bmatrix}$, where $A$ is again some matrix. How does the nuclear/trace norm of $||X||_{\text{tr}}$ relate to $||A||_{\text{tr}}$?
Can I say that they are equal because there exists some permutation matrix such that A i.e. is the upper left hand block. Furthermore permutation matrices are unitary and the Schatten norms are unitarily invariant which means $||X||_{\text{tr}} = ||A||_{\text{tr}}$?
Your approach with the permutation matrix works out. An alternative argument would be to just use the definition.
Namely, by definition we have
\begin{align*} \Vert X \Vert_\mathrm{tr} = \mathrm{tr}(\sqrt{X^* X}). \end{align*} However, \begin{align*} X^* X = \begin{pmatrix} 0 & 0 \\ A^* & 0 \end{pmatrix} \begin{pmatrix} 0 & A \\ 0 & 0\end{pmatrix} = \begin{pmatrix} 0 & 0 \\ 0 & A^* A \end{pmatrix} \end{align*} Thus, \begin{align*} \sqrt{X^* X} = \begin{pmatrix} 0 & 0 \\ 0 & \sqrt{A^* A} \end{pmatrix} \end{align*} and therefore \begin{align*} \Vert X \Vert_\mathrm{tr} = \mathrm{tr}(\sqrt{X^* X}) = \mathrm{tr}(\sqrt{A^* A}) = \Vert A \Vert_\mathrm{tr}. \end{align*}