Axiom of Regularity/Foundation
∀ ( ≠ ∅ → ∃ ( ∈ ∧ ⋂ = ∅))
This says that every non-empty set must contain a set that shares no elements with it.
So, how do we understand axiom of regularity is talking about a set with "y" just from the notation?
(I think using intersection ⋂ gives a clue that y is a set because only sets intersects not elements but not sure if its right inference.)
There's less here than meets the eye. In $\mathsf{ZFC}$, everything is a set. So $y$ is a set because it can't not be.
(This is the source of the most common criticism of $\mathsf{ZFC}$, incidentally: that formalizing mathematics in $\mathsf{ZFC}$ inevitably leads to "junk theorems." See here for example.)