Here, a circuit board is defined as a pair of planar graphs with vertices identified, i.e. a ordered triple $\langle V,E_1,E_2\rangle$ such that there are planar embeddings $h_1,h_2$ for the planar graphs $\langle V,E_1\rangle$ and $\langle V,E_2\rangle$, respectively, such that $h_1(v)=h_2(v)$ for each $v\in V$. Does every simple graph $\langle V,E\rangle$ admit a decomposition $E=E_1\sqcup E_2$ such that $\langle V,E_1,E_2\rangle$ is a circuit board?
If the answer is no, is there a finite $n$ such that every simple graph admits an $n$-layer circuit board decomposition (the generalization to more than two layers should be clear)?

The answer to your first question is no. Take $K_{11}$, which has 55 edges. Then one of $E_1$ and $E_2$ has at least $28$ edges. Say $|E_1|\geq 28$. On the other hand, any planar graph satisfies $|E|\leq 3|V|-6$, and so if $(V,E_1)$ was planar, then $28\leq |E_1|\leq 33-6=27$, a contradiction.
Just to complete this answer (even though I like the Ramsey number idea better), for any potential $n$, choose $m$ such that $$\frac{m(m-1)}{6m-12}>n,$$ then run through the above argument using $K_m$.