Wiki defined a rooted graph as a graph in which one vertex has been distinguished as a root.
What do they exactly mean by a root? Is it when every other vertex is the extremity of a path coming from the root? If yes then rooted graphs should be connected, right?
If this is Wikipedia's definition, then there is nothing more to be said: a rooted graph is, within (that page on) Wikipedia, just a graph with a distinguished node. In particular, it need not be connected.
I have personally never encountered a "root" outside of a tree, and trees are by definition connected -- presumably in practice the graphs you are interested in will be connected ones.