Let $\{f_n(x)\}_{n\in\mathbb{N}}$ a family of infinitely differentiable functions, defined on the entire real line, vanishing outside $[a,b]$. Let $F(x)$ be any function defined on $\mathbb{R}$ with the property that $F$ and all its derivatives are $O(|x|^{-N})$ as $|x|\to\infty$, for every $N$.
By hypothesis, the following limit:
$$\lim_{n\to\infty}\int_{x=a}^b f_n(x)F(x)\mathrm{d}x$$
exists for any $F$ of the type specified above.
Is it true or false that $\lim_{|\xi|\to\infty}\left(\lim_{n\to\infty}\int_{x=a}^b f_n(x)F(x-\xi)\mathrm{d}x\right)=0$ ?
For me it is intuitively true, because $F(x-\xi)$ 'slip away' to infinity as $|\xi|\to\infty$, leaving inside $[a,b]$ a smaller and smaller contribution, but I can't formalize this argument.
We make use of the theorem below.
Now let $(f_n)_{n\in\mathbb{N}}$ be the sequence of smooth functions as in OP's hypothesis, and let $T$ be the linear functional on $C^{\infty}_c(\mathbb{R})$ defined by the relation
$$ \langle T, \varphi \rangle = \lim_{n\to\infty} \int_{a}^{b} f_n(x) \varphi(x) \, \mathrm{d}x $$
for all $\varphi \in C^{\infty}_c(\mathbb{R})$. Then the theorem tells that $T$ is a distribution supported on the compact interval $[a, b]$. Since every compactly supported distribution had finite order, this implies that there exist an integer $k \geq 0$ and a finite constant $C \geq 0$ satisfying
$$ |\langle T, \varphi \rangle| \leq C \sup_{x \in K} |\varphi^{(k)}(x)| $$
for any $\varphi \in C^{\infty}(\mathbb{R})$. Consequently, for any $F$ satisfying OP's condition,
\begin{align*} \lim_{n\to\infty} \int_{a}^{b} f_n(x)F(x-\xi) \, \mathrm{d}x &= \langle T, F(\cdot - \xi) \rangle = \mathcal{O}\left( \sup_{x \in K} |F^{(k)}(x - \xi)| \right) \end{align*}
Now it is easy to check that this vanishes as $|\xi| \to \infty$.