Let $N=\{1,\dots,n\}$ and $A,B$ be $n\times n$ skew symmetric matrices such that it is possible to permute some rows and some columns from $A$ to get $B$. In other words, for some permutations $g,h: N\rightarrow N$, $$A_{i,j}=B_{g(i),h(j)}$$ for all $1\leq i,j\leq n$. Must there exist a permutation $f:N\rightarrow N$ such that $$A_{i,j}=B_{f(i),f(j)}$$for all $1\leq i,j\leq n?$
For example, let $$A=\begin{pmatrix} 0 & 3 \\ -3 & 0 \end{pmatrix} , B=\begin{pmatrix} 0 & -3 \\ 3 & 0 \end{pmatrix} $$ If we switch the rows and also switch the columns, we get from $A$ to $B$. And there exists a permutation $f$ with $f(1)=2,f(2)=1$ such that $A_{i,j}=B_{f(i),f(j)}$ for all $1\leq i,j\leq 2$.
There exists an example with $g\neq h$. Let $$A=\begin{pmatrix} 0 & 0 & 2 & -2 \\ 0 & 0 & -2 & 2 \\ -2 & 2 & 0 & 0 \\ 2 & -2 & 0 & 0 \end{pmatrix} , B=\begin{pmatrix} 0 & 0 & -2 & 2 \\ 0 & 0 & 2 & -2 \\ 2 & -2 & 0 & 0 \\ -2 & 2 & 0 & 0 \end{pmatrix} $$
One possibility for $g,h$ is $g(i)=i$ for all $i$, $h(1)=2,h(2)=1,h(3)=4,h(4)=3$. In this case we can let $f(1)=2,f(2)=1,f(3)=3,f(4)=4$.
This is a counterexample. Let $O,I,J$ be the $2\times 2$ matrices $$\begin{pmatrix}0&0\\0&0\end{pmatrix},\,\,\begin{pmatrix}1&0\\0&1\end{pmatrix},\,\,\begin{pmatrix}0&1\\1&0\end{pmatrix},$$ respectively. Define the two $6\times6$ matrices $$A=\begin{pmatrix}O&I&I\\-I&O&I\\-I&-I&O\end{pmatrix},\,\,\,\,\, B=\begin{pmatrix}O&J&J\\-J&O&J\\-J&-J&O\end{pmatrix}.$$ We see that $B$ can be obtained by applying the permutation $(12)(34)(56)$ to the rows of $A$. On the other hand, there is no permutation $\sigma$ such that $A_{ij}=B_{\sigma(i)\sigma(j)}$. Unfortunately, I have no intuitive explanation why there is no such $\sigma$, but you can check this fact here (this is A) and here (this is B) --- there is no $\sigma$ sending the eigenvectors of $A$ to the eigenvectors of $B$.