I read from an article that the space $X=S^5/Z_q$ is not a Lens space because the orbifold action is not compatible with the action of the Hopf fibration $S^1\longrightarrow S^5\longrightarrow CP^2$. However, an article tells me that the Leray spectral sequence gives the following torsion terms
$H_1(S^5/Z_q)=Z_q$
$H_3(S^5/Z_q)=Z_q$
The question is: are there ways to compute the homologies for these spaces for all $q$'s? How in general an homology is computed, or maybe how can I see (more or less easily) that some homology of these such spaces have a torsion term?
I don't know how the Leray spectral sequence works but still I'm interested in ways of computing homologies for spaces that are modded by some orbifold action (let's say also abelian orbifolds). Are there any practical references or some way to compute such things?
Edit: the spectral sequence argument to prove my theorem is given more concisely in Max's answer
The geometric intuition here is that if we're considering free actions of a topological group $G$ on a sphere $S^k$, then the quotient $S^k/G$ is "homotopically the same" as the classifying space $BG$ in degrees that are small relative to $k$ (in particular they have the same homotopy and homology groups in these degrees), essentially since $BG$ is a quotient of a contractible space by a free action, and $S^k$ is $(k-1)$-connected so it "looks contractible" below degree $k$. Computing the homology of $BG$ is usually done via spectral sequence. In our case when $G=\mathbb{Z}/n$ for $n> 1$ then the homology of $BG$ is isomorphic to $\mathbb{Z}/n$ in every odd degree and is $0$ otherwise (see the bottom of my post), so this is one way of seeing where the torsion is coming from in $H_1$ and $H_3$ of $S^5/(\mathbb{Z}/n)$.
If you're interested in seeing how the spectral sequence argument goes, I think I figured out what they were aiming for. I just noticed in one of your comments that you're very new to proofs in general so this might be a bit advanced, but believe it or not it's relatively nice as far as spectral sequences go.
My spectral sequence argument actually establishes the following:
Theorem: If $G$ is a topological group with an action on $S^k$ such that the quotient map is a fibre bundle (for finite groups it's enough that the action is free), and $BG$ is the classifying space of principal $G$-bundles, then
$$ H_p(S^k/G) \cong H_p(BG) \text{ for }p\leq k.$$
You can also get this result via proving the analogue for homotopy groups first and then showing that implies the homology result. In our particular case of $\mathbb{Z}/n$ acting on $S^5$, this result combined with the spectral sequence computation in the Aside tells us that $H_1(X)\cong H_3(X) \cong \mathbb{Z}/n$, regardless of the free action we started with.
Proof via spectral sequence: Suppose $G$ is a topological group (for our case it will be $\mathbb{Z}/n$) and suppose it admits a free action on $S^k$ such that the quotient map $S^k \to X= S^k/G$ is a fibre bundle. This is in particular a fibration so we could try study its Leray-Serre spectral sequence, but it turns out a slightly different fibration is more convenient here. Instead, use the fact that this principal $G$ bundle is classified by a map to the classifying space $BG$, such that
$$ S^k \to X \to BG $$ is equivalent to a fibration. If $G$ is a discrete group the spectral sequence for this fibration is usually called the spectral sequence for a covering space.
The $E^2$ page has groups
$$ E^2_{p,q} \cong H_p(BG ; H_q(S^k)) $$
and it converges to $H_{p+q}(X)$. These groups can only be non-zero when $q =0$ or $k$, and the $q=0$ row is just a copy of $H_*(BG)$. If $\pi_1 BG\cong \pi_0 G \neq 0$ we need to use twisted coefficients when $q = k$ where the action of $\pi_0 G$ on $H_k(S^k)$ is induced by the original action on the space $S^k$, and so the $k$-th row of the $E^2$ page (along with the differentials) will depend on the particular action. What doesn't depend on the action is that the only non-zero differentials are $d_{k+1}$ and so the groups $\{E^r_{p,0}\}_{p\leq k}$ are never hit by any differentials for $r >1$, so must survive as $\{H_p(X)\}_{p\leq k}$. The result follows since $E^2_{p,0}\cong H_p(BG)$.
Aside: The integral homology of $BG$ where $G=\mathbb{Z}/n$ is
$$ H_p(B\mathbb{Z}/n) \cong \begin{cases} \mathbb{Z} & \text{if}\, p=0 \\ \mathbb{Z}/n & \text{if}\, p \text{ is odd} \\ 0 &\text{otherwise} \end{cases} $$
This can be seen via another spectral sequence argument. First you do the usual computation of the spectral sequence for $S^1 \to S^\infty \to \mathbb{CP}^\infty$ and find out that the $E^2$ page is concentrated in the first two rows, and at the same time compute the cohomology of $\mathbb{CP}^\infty$ and show that every non-trivial differential must be an isomorphism. Now restrict the $S^1$ action on $S^\infty$ to the subgroup $\mathbb{Z}/n$ and construct $BG$ as the quotient $S^\infty/G$, and notice that you get a map from $BG \to \mathbb{CP}^\infty$ whose fibre is $S^1/n\mathbb{Z}$. In fact this gives a fibration
$$ S^1 \to B\mathbb{Z}/n \to \mathbb{CP}^\infty $$
and a map of fibrations from $S^1 \to S^\infty \to \mathbb{CP}^\infty$ which is a degree $n$ map on the fibres. By considering the induced map on spectral sequences you can deduce the result.