Let $X = (V,E)$ be a graph whose edges are colored $( |V| = n)$ and assume that vertices are numbered from 1 to $n$. Now consider this group action: $$\pi : Aut(X) \times [n] \mapsto [n]$$
I know that $Aut(X)$ preserve the color of the edges i.e. it will map a red edge to red edge only.
I am interested in how orbits going to look in this situation. Are all red edges going to be in a single orbit and all blue edges going to be in a different orbit etc?
I tried on smaller graph, see the diagram below:
In the digram above, Is option 1 correct ?
In general, how the orbits are going to look like ?
EDIT : $Aut(X)$ also preserve the edge colours.

For the non-edge-colored version, the automorphism group is going to be everything, i.e., the symmetric group $$\mathrm{Aut}(X)=\{\mathrm{id},(12),(13),(23),(123),(132)\}.$$ And we can compute there is a single edge orbit $$\{12,13,23\}.$$
Switching to the edge-colored version, we redefine what it means to be an automorphism. Here, automorphisms are not only permutations that maps edges to edges and non-edges to non-edges, but they also preserve edge colors.
By inspection $(13)$ is the only non-trivial permutation of the vertices that maps red edges to red edges and blue edges to blue edges. So we have $$\mathrm{Aut}(X_{\text{edge-col}})=\{\mathrm{id},(13)\}.$$
We can compute that there are two orbits under this group action $$\{13\}$$ since the edge $13$ maps to itself after permuting the vertices according to $\mathrm{id}$ and $(13)$ and $$\{12,23\}$$ since edge $12$ maps to itself after permuting the vertices according to $\mathrm{id}$ and maps to $23$ after permuting the vertices according to $(13)$.
Specific comments:
$(12)$ cannot be an automorphism of the edge-colored graph, as the blue edge $13$ maps to the red edge $(23)$.
Item 2. in the question is not a group, so it can't be the automorphism group of anything.