This feels like a very natural question, but I am struggling to find a reference. Consider a simple graph $G$, and say two vertices are conjugate if there exists an automorphism of $G$ that switches them. It is not hard to show that if $v,w$ are conjugate than the induced subgraphs on $G\setminus v$ and $G\setminus w$ are isomorphic.
But is the converse true?
More generally, suppose I have a symmetric square matrix $M$. For each index $i$, I will denote $M_i$ to be the square matrix $M$ with row and column $i$ deleted. If for some indices $i,j$, $M_i$ is a permutation of $M_j$, does it follow that there exists a permutation of the indices of $M$ that fixes $M$ but swaps $i$ and $j$?
Here is a counterexample (the skeleton graph of the "pistol" hexiamond, according to the naming from Iamond Ring; MathWorld also calls it the "signpost" hexiamond):
If $G$ is the graph above, then $G-4$ and $G-8$ are isomorphic: they are both the skeleton graph of the same pentiamond (which Iamond Ring calls a "funnel"). However, $G$ has no nontrivial automorphisms - in particular, not one that swaps vertices $4$ and $8$. (We can distinguish vertex $7$ in $G$ as the only degree-$3$ vertex adjacent to both degree-$5$ vertices, and then distinguish vertex $4$ from $8$ as the only degree-$2$ vertex adjacent to vertex $7$.)
There are probably many other examples; the way I found this one was by searching Mathematica's
GraphData[]collection for graphs with no nontrivial automorphisms, then testing every graph $G$ I found for having a pair of vertices $\{v,w\}$ such that $G-v$ is isomorphic to $G-w$.