When two subvarieties intersect properly ($X_1\cap X_2$), it should end up with a new subvariety($X_3$=$X_1\cap X_2$). I do not know how to keep track of the intersection operation from the algebraic view. I feel I can say little about $I(X_3)$.
If $p_1$ and $p_2$ are prime ideals in a commutative ring $R$, what do we know about minimal prime ideal over (ideal generated by elements in $p_1$ and $p_2$)?
I hope someone could give some examples like <$p_1$, $p_2$> is not prime...to help me get more organic feeling of what may happen.
Thanks!
For convenience, we discuss subvarieties of $\mathbb{A}^n$.
Say $X_1=V(I_1),X_2=V(I_2)$, so $X_i$ consists of $n$-tuples on which every polynomial in $I_i$ vanishes. The intersection consists of all tuples on which every element in both $I_1$ and $I_2$ vanishes, thus $$X_1\cap X_2=V(I_1+I_2)=V(\sqrt{I_1+I_2}).$$This intersection is a(n irreducible) variety if and only if $\sqrt{I_1+I_2}$ is prime.
Now, for example, let $n=2$, $X_1=V(x^2-y-1),\quad X_2=V(y)$. It is easy to see that $$I_1+I_2=(x^2-1,y),$$which is radical but not prime. Geometrically, the intersection consists of two points, namely $(1,0)$ and $(-1,0)$, thus it is not connected and certainly reducible.