Let $B$ be a compact Hausdorff base space, $p:E \rightarrow B$ a vector bundle.
As outlined in Hatcher's, pg 45 we may associate a norm to bundle endomoprhisms, denoted $End(E)$, a norm. Given by $$ |\alpha| = \sup_{z \in B} ||\alpha_z||$$ where $||\alpha_z||$ is the norm of the linear operator $\alpha$ when restricted to a fiber of $z$. $|| \cdot ||$ being a norm induced by a choice of inner product on $E$.
$End(E) \subseteq E^E$, hence, it inherits as a subspace, of the compact open topology of mappings.
Are these topologies the same? Is one coarser than the other?
Though I do not really understand the proof given, I have written down a proof that hopefully explicates user10354138's proof.
They are equivalent.
A linear map $\mathbb{R}^n\to\mathbb{R}^n$ is determined by its $S^{n-1}\to\mathbb{R}^n$ (similarly for $\mathbb{C}$). So the compact-open topology of $\operatorname{End}E$ can be taken as coming from $E^\Sigma$, where $\Sigma$ is the (fiber, not vector) subbundle of $E$ consisting of unit vectors. Then $\Sigma$ is compact. And $\{v\in E\mid\|v\|<r\}$ is open, so $\{|\alpha|<r\}$ is an open set in the compact-open topology. Obviously we can also translate, so $\{\alpha\mid |\alpha-\beta|<r\}$ is also open. This proves one inclusion, and the other direction is obvious.