I am interested if there is notation for a derivative that is in between a total derivative and partial derivative.
The total derivative of $f(t,x,y)$ with respect to $t$ is $$ \frac{df}{dt}=\frac{\partial f}{\partial t}+\frac{\partial f}{\partial x}\frac{dx}{dt}+\frac{\partial f}{\partial y}\frac{dy}{dt} $$ while the partial derivative of $f(t,x,y)$ with respect to $t$, holds $x$ and $y$ constant, and is $\frac{\partial f}{\partial t}$.
I am interested in an intermediary derivative that, say only holds $x$ constant, and is equal to $$ \frac{df}{dt}=\frac{\partial f}{\partial t}+0+\frac{\partial f}{\partial y}\frac{dy}{dt} $$ Is there any notation I can use for this kind of derivative?
I am writing this answer since I believe that too many beginners overrate the concept of total derivative. In mathematics we differentiate functions, not "variables". When the OP wrote $$ \frac{df}{dt}=\frac{\partial f}{\partial t}+\frac{\partial f}{\partial x}\frac{dx}{dt}+\frac{\partial f}{\partial y}\frac{dy}{dt}, $$ he used the symbol $f$ with at least two different meanings.
In the left-hand side $f$ is understood as a function of a single (real) variable. In the right-hand side, $f$ is thought of as a function of three (real) variables. This identity is what we call an abuse of notation.
Moreover, the so-called total derivative is essentially a ghost: it is a notation for lazy people who do not want to be rigorous and write
The total derivative is just the chain rule for lazy people, so to say. If we want to fix one variable, say $x$, and differentiate $h(t)=f(t,x,y(t))$, we'd rather state it clearly to avoid any misunderstanding.