My title may have come off as informal or nonspecific. But, in fact, my title could not be more specific.
Define a sequence with initial term: $$S_0=1+\frac{1}{1+\frac{1}{1+\frac1{\ddots}}}$$ It is well-known that $S_0=\frac{1+\sqrt{5}}{2}$. I do not write it as such because, in order to describe the next term, we must look at its continued fraction representation. Take every $1$ not a numerator and replace it with $\frac1{1+\frac1{\ddots}}$ to get: $$S_1=\frac1{1+\frac1{1+\frac1{\ddots}}} +\frac{1}{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}}$$ Repeat to get: $$S_2=\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac{1}{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\ddots}}}$$ One more time, for good measure: $$S_3=\frac{1}{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\ddots}}}+\frac1{\frac{1}{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\ddots}}}+\frac1{\frac{1}{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\frac1{\frac1{1+\frac1{1+\frac1{\ddots}}}+\frac1\ddots}+\frac1{\ddots}}}+\frac1{\ddots}}}$$ We buzz like fat bees to the question:
$$\text{What is } \lim_{n \to \infty}S_n\text{?}$$
My almost-solution: Define a recursive sequence as follows: $$\eta_0 = 1$$ $$\eta_k = \frac1{\eta_{k-1}+\frac1{\eta_{k-1}+\frac1\ddots}}$$ Notice: $$\eta_k = \frac1{\eta_{k-1}+\eta_k} \implies \eta_k\eta_{k-1}+\eta_k^2-1=0 \implies \eta_k=\frac{-\eta_{k-1}+\sqrt{\eta_{k-1}^2+4}}2$$ We force the square root in the numerator to be positive for obvious reasons. Now, notice: $$S_0 = \eta_0+\eta_1 = \varphi$$ $$S_1 = S_0-\eta_0+\eta_2=\eta_1+\eta_2$$ $$S_2 = S_1-\eta_1+\eta_3 = \eta_2 + \eta_3$$ $$S_3 = S_2-\eta_2+\eta_4 = \eta_3 + \eta_4$$ $$\vdots$$ $$S_n = S_{n-1} - \eta_{n-1} + \eta_{n+1} = \eta_n + \eta_{n+1}$$ By how I defined $\eta_i$, we may rewrite the RHS as: $$S_n = \eta_n + \frac{-\eta_n+\sqrt{\eta_n^2+4}}2 \implies S_n = \frac{\eta_n+\sqrt{\eta_n^2+4}}2$$ This may also be obtained by the equivalence (which I noticed visually): $$\eta_k = \frac1{S_{k-1}}$$ For $k \geq 1$. I omit the proof of this, although it is simple. With this in mind, we see: $$S_k = \frac{\eta_k+\sqrt{\eta_k^2+4}}2 \implies 2S_k = \eta_k+\sqrt{\eta_k^2+4}$$ $$\implies 2S_k = \frac1{\eta_{k-1}+\eta_k} + \sqrt{\frac1{(\eta_{k-1}+\eta_k)^2 }+4}$$ $$\implies 2S_k = \frac1{\frac1{S_{k-2}} + \frac1{S_{k-1}}} + \sqrt{\frac1{(\frac1{S_{k-2}} + \frac1{S_{k-1}})^2 }+4}$$ Which, as $k \to \infty$, becomes the sum of an infinitely nested fraction and the square root of the sum of the reciprocal of a square of an infinitely nested fraction and $4$. In theory, this can be evaluated. But I draw my final breath and collapse, dead.
More seriously, what I have done is defined $S_n$ recursively, with initial values $S_0 = \varphi$ and $S_1 = \varphi + \frac1{\varphi+\frac1{\ddots}}$. But I don't know if this converges. An inverse symbolic calculator might find something.
Edit (Solution): it converges to $\sqrt{2}$.
It's not too hard to show** the sequence $\eta_k\to\frac{1}{\sqrt{2}}$ as $k\to\infty$, implying your desired $k\to\infty$ limit of $S_k=\eta_k^{-1}$ is $\sqrt{2}$. There is an error in your obtaining a recursion relation for the sequence $S_k$: it should read$$\color{limegreen}{2}S_k=\frac{1}{\frac{1}{S_{k-2}}+\frac{1}{S_{k-1}}}+\sqrt{\frac{1}{(\frac{1}{S_{k-2}}+\frac{1}{S_{k-1}})^2}+4}.$$One could also obtain the behaviour of $S_n$ from $\eta_n+\eta_{n+1}$.
** The convergence is linear. Writing $\eta_k=\frac{1}{\sqrt{2}}+\epsilon_k$ gives $\eta_k^2+4=\frac92+\epsilon_k\sqrt{2}+\epsilon_k^2$ and $\sqrt{\eta_k^2+4}=\frac{3}{\sqrt{2}}+\frac13\epsilon_k+O(\epsilon_k^2)$, whence $\eta_{k+1}=\frac{1}{\sqrt{2}}-\frac13\epsilon_k+O(\epsilon_k^2)$ and $S_k=\eta_k+\eta_{k+1}=\sqrt{2}+\frac23\epsilon_k+O(\epsilon_k^2)$.