What is a number of ways we can do that?
Of course we have $64$ choices for the first one and then $49$ choices for the second one. So we have $64\cdot 49$ ways to put them. But some of the configurations are essentially the same if we say rotate chessboard or reflect across some diagonal. So we should divide $64 \cdot 49$ with some number. But which? Is it $4$ since we have $4$ rotations which takes chessboard to it self? And then also by $4$ since we have $4$ reflections across the line? So the final result should be $$64\cdot 49\over 16$$ But I feel this is not correct, since if we have $7\times 7$ ''chessboard'' then we would get the result: $$49\cdot 36\over 16$$ which is not an integer.
A rook that is not on a main diagonal can be taken to eight other squares by rotation and reflection. A rook that is on the main diagonal can be taken to four other squares. If the two rooks are not on the same main diagonal we should divide by $8$ because we can do four rotations and either a reflection or not. If the two rooks are on the same diagonal we should only divide by $4$ because the reflection does not matter. There are $2\cdot 8 \cdot 7=112$ positions with the two rooks on one diagonal, so there are $\frac {112}4=28$ that are different after considering rotation and reflection. There are then $\frac 18(64\cdot 49-112)=378$ distinct positions with the rooks not on the same diagonal, for a total of $406$.