Let $\tau_U$ and $\tau_P$ be the uniform (i.e. sup-metric) and product topologies on $[0,1]^\mathbb{N}$, respectively. Clearly, these topologies are not the same ($\tau_P$ is separable and $\tau_U$ is not, for instance). However, a typical basic open set in $\tau_U$,
$V_{x,\epsilon} = \{ y : \forall n\in\mathbb{N}\;\; |x_n - y_n| < \epsilon \}$
is easily seen to be a $G_\delta$ set in $\tau_P$.
Question 1: Is every open set in $\tau_U$ in the $\sigma$-algebra generated by $\tau_P$?
My guess is "no", although I haven't been able to come up with a counterexample so far. Assuming I'm right, though, I have the following weaker question;
Question 2: Does every open set in $\tau_U$ differ from an open set in $\tau_P$ by a meager set? I.e., does every open set in $\tau_U$ have the Baire Property?
The answer to question 1 is no. As shown in this answer, the $\sigma$-algebra generated by any countable family of sets (such as the Borel $\sigma$-algebra of a separable metrizable space, which $\tau_P$ is) has cardinality at most $\mathfrak{c}$.
On the other hand, $\tau_U$ contains $2^\mathfrak{c}$ distinct open sets. For any $\mathcal{A} \subset 2^\mathbb{N}$, let $$U_\mathcal{A} = \bigcup_{A \in \mathcal{A}} B(1_A, 1/2).$$ Clearly $U_\mathcal{A}$ is open. Since for any $A \subset \mathbb{N}$ we have $1_A \in U_\mathcal{A}$ iff $A \in \mathcal{A}$, we have $U_\mathcal{A} = U_{\mathcal{A}'}$ iff $\mathcal{A} = \mathcal{A}'$. Hence $\{U_\mathcal{A} : \mathcal{A} \in 2^\mathbb{N}\}$ are $2^{2^\mathbb{N}}$ distinct open sets in $\tau_U$.