I've been thinking about the identification of objects from different mathematical theories. For example, when you do set theoretic constructions of the natural numbers and identify, e.g., 0 with the empty set. Or, when you use Cartesian coordinate systems and identify points in n-dimensional Euclidean spaces with n-tuples of real numbers.
What is the purpose of these identifications? What advantage do mathematicians gain from studying geometry from an analytic perspective, or studying number theory from a set theoretic perspective? Do all of these cross-theoretic identifications serve a single purpose or are their different reasons to adopt them (e.g., maybe set-theoretic identifications are more important because of some foundationalist assumption that "set theory is the ultimate court of appeals in mathematics")?

The question runs together two different issues, it seems:
Now, there are (for example) plenty of examples of proofs in geometry that are easier when you go via a coordinate system. But note that these do not depend on identifying points in a Euclidean space with a tuple of reals. It is enough if we can set up isomorphisms between structures in Euclidean three-space, for example, and structures in $\mathbb{R}$. Likewise in other cases.
The required isomorphisms won't be unique. In the case of choosing a coordinate scheme, we need to choose origin, orientation, and the size of a unit along each coordinate axis. Of course, for a particular problem, some choices will be a more covenient than others! But still, the association of points with tuples will involve more-or-less arbitrary choices. No coordinate scheme can be said to reveal which tuple of numbers a given point "really" is. So, often, talk of identifying objects from the different mathematical domains strictly speaking overshoots: it is less misleading to say the tuples "represent" or "model" the space.