Currently, a discussion started on the German Wikipedia article for Empty Set (the German discussion), whether $\emptyset$ or $\varnothing$ should be used or is more common as a symbol for an empty set.
Do you know any sources for this question? Do you know a source for the statement, that Nicolas Bourbaki was the first who used this symbol?
I would say the following should be not too controversial:
$\emptyset$ and $\varnothing$ are typographical variants of the same mathematical symbol designating the empty set
The symbol was introduced by Bourbaki, was inspired by the Norwegian character Ø, but is a distinct character from it
The intention was most probably to create a symbol related to $0$ (zero), not to O (Oh), distinguished from it by striking it through. After all the empty set has all kinds of relations with the number $0$, but none with the letter O. (By contrast big-Oh and little-o symbols derive from the word "order".)
The symbol has absolutely no relation (apart from appearance) with the lower-case Greek letter phi, with typographical variants $\phi$ and $\varphi$.