Why do we assume the set of all sets that do not contain themselves exists?

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It seems to me that the set of all sets that do not contain themselves is very similar to the set \begin{equation} X = \{x | \ x \not\in X\} \end{equation} which is again very similar to the number $x$ such that \begin{equation} x\neq x \end{equation} For this number $x$ we simply state, \begin{equation} \mathrel{\nexists} x \in \mathbb{R} : x\neq x \end{equation} Why isn't the same done in the case of sets? \begin{equation} \mathrel{\nexists} X : X = \{x | \ x \not\in X\} \end{equation} and \begin{equation} \mathrel{\nexists} X : X \text{ contains all the sets that do not contain themselves} \end{equation}

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We do! Assuming the existence of such a set, we can reach a contradiction. This proves that no such set exists. So, it is a theorem of set theory that there does not exist a set of all sets that do not contain themselves.

The problem (in set theory with unrestricted comprehension) is, it is also a theorem that such a set does exist. Namely, the unrestricted comprehension axiom says that for any property $P$, there exists a set whose elements are exactly the sets that satisfy $P$. In particular, if $P(x)$ is $x\not\in x$, this means that there is a set $\{x:x\not\in x\}$.

So, it is both a theorem that $\{x:x\not\in x\}$ does not exist and a theorem that it does exist. This is a contradiction which makes set theory with unrestricted comprehension inconsistent.

In modern set theory, though, the axiom of unrestricted comprehension is not accepted (since it leads to a contradiction!). So, Russell's paradox becomes simply a theorem that $\{x:x\not\in x\}$ does not exist, not an actual paradox.