Suppose you have a topological space $X$ and a subspace $A$. Their chain complexes are made up of free abelian groups $C_n(X)$ and $C_n(A)$ are the free abelian groups on the $n$-simplexes on $X$ and $A$, respectively.
If we take the quotient complex we get another chain $$ \cdots\to C_2(X)/C_2(A)\to C_1(X)/C_1(A)\to C_0(X)/C_0(A)\to\cdots $$ of abelian groups.
Are these quotients still free abelian groups though? I know in general that the quotient of a free abelian need not be free, but is it any different in this case however?
Yes, they are free. A basis for $C_n(X)/C_n(A)$ consists of all $n$-simplices in $X$ not contained in $A$ (they may intersect $A$, so long as they are not entirely contained in $A$ in which case they will be in $C_n(A)$ and hence $0$ in the quotient $C_n(X)/C_n(A)$).
Hope this helps!