Consider a complex smooth (projective) surface $X$ and a blow-up $\epsilon:S\longrightarrow X$ at a point $x\in X$. Let $\sigma\in\text{Aut}(\mathbb C)$ be a field automorphism and moreover let
$$\varphi:=\epsilon\times_{\text{Spec}\mathbb C}\text{id}_{\text{Spec}\mathbb C}:S\times_{\text{Spec}\mathbb C}\text{Spec}\mathbb C\longrightarrow X\times_{\text{Spec}\mathbb C}\text{Spec}\mathbb C$$
be the morphism induced by the base change through the automorphism $\sigma$. Is the morphism $\varphi$ again a blow-up? I think that the answer is yes since the base change induces many isomorphisms of schemes. What do you think?
Many thanks in advance.
The following result is the Universal Property of Blowing Up as stated in Hartshorne Algebraic Geometry Proposition II.7.14.
Now suppose $f:Y \rightarrow X$ is an isomorphism with inverse map $g$. Let $I$ and $S$ be as in the proposition.
In your case, $Y=X \times_{Spec\mathbb{C}} Spec{\mathbb{C}}$ and $f$ is the isomorphism $Y$ to $X$ induced by the field automorphism. $I$ is the ideal sheaf of the point $x$.
Let $J$ be the coherent sheaf of ideals $(f^{-1}I)O_Y$ on $Y$, let $\rho:\bar Y \rightarrow Y$ be the blowing up along $J$, and let $\bar f = f \circ \rho $. Then $(\bar f^{-1}I)O_{\bar Y} = (\rho^{-1}J)O_{\bar Y}$ and the right hand side is an invertible sheaf of ideals on $\bar Y$ because of Hartshorne II.7.13 (in plain language, blowing up the $J$ closed subscheme on $Y$ gives you a divisor on $\bar Y$). Thus, by the quoted result, we get a morphism $h:\bar Y \rightarrow S$ which makes a commutative square with corners $\bar Y$, $S$, $Y$, and $X$. This $h$ is an isomorphism because you can run the same argument with $g = f^{-1}$ in place of $f$.
The only question now is why is $\bar{Y}$ isomorphic to the base change $Y \times_X S$? Because of the commutative square, we have a factorization of $h$ into $\bar Y \rightarrow Y \times_X S \rightarrow S$. The first map in the factorization must be an isomorphism, because the composite $h$ is an isomorphism and the second map is also an isomorphism (isomorphisms are preserved by base change).
In sum, this proves the more general proposition:
Prop: If $S$ is the blow-up of $X$ along $I$, and $Y \rightarrow X$ is an isomorphism then $Y \times_X S$ over $Y$ is canonically the blow up of the inverse image of $I$ on $Y$.
And finally, to bring it back to your original question, the answer is yes. $\varphi$ is the blowup of $X \times_{Spec{\mathbb{C}}} Spec\mathbb{C}$ at the unique preimage $x'$ of $x$.