I am doing something computationally intensive that requires that I compute the fast fourier transform of a matrix, let's say $A$, and also compute the FFT of its square, $A^2$.
I am wondering if there is some property of the FFT of $A$ that relates to the FFT of $A^2$ that would be less computationally intensive than doing two FFTs.
Assuming nothing about the structure of the input, you can always save yourself at last one FFT operation along the columns (or rows). Assume $\mathbf{A}\in \mathbb{C}^{M\times N}$, and let $\mathbf{R} \in \mathbb{C}^{M \times M}$ be the column transform and $\mathbf{C} \in \mathbb{C}^{N \times N}$ be the row transform. Then
$$ \begin{array}{rcl} \mathcal{F}(\mathbf{A})&=&\mathbf{RAC} \\ \mathcal{F}(\mathbf{A}^2)&=&\mathbf{RAAC} \end{array} $$
If you store $\mathbf{RA}$ (or $\mathbf{AC}$), you can then reuse it when finding $\mathcal{F}(\mathbf{A}^2)$: