I'm a little bit confused on how to manipulate definitions and theorems in finding counterexamples. Take the following lemma
Lemma 13.1 Let $X$ be a set; let $\beta$ be a basis for a topology $\tau$ on $X$. Then $\tau $ equals the collection of all unions of elements of $\beta$.
So In this case how would I properly manipulate/remove the hypothesis. For some reason I just end up getting Let X be a set; Then $\tau$ equals the collection of all unions of elements of $\beta$.
Sorry if this sounds stupid and ridiculous but I just need clarification.
How would I in general manipulate definitions/theorems?
You could rephrase the particular statement you wrote as follows.
Depending on what definition of basis you are using this statement may be trivial. For example if your definition of a basis is:
Then of course the statement is trivial. However if your definition of basis reads something like:
Then there is something (minor) to be said about why such a definition would imply that $\tau$ is made up of unions of elements of $\beta$.
In general, when dissecting mathematical statements it is important to recall (or look up) what the definitions of the key terms are. Then what a statement is "saying" usually becomes more clear.