I have a Set $S$, $|S|=n$, and I need to count how many symetric and transitive relations are in $S$ that are not equivalence relations.
I know how to count equivalence relations (Bell number) but I don't konw how to count the relations that are symetric and transitive at the same time.
There are $B_n$ equivalence relations on $[n]$. As shown in the two threads linked to in the comments, there are $B_{n+1}$ relations on $[n]$ that are symmetric and transitive. Thus there are $B_{n+1}-B_n$ relations that are symmetric and transitive but not reflexive.