Is there any intuition behind surface integrals and their applications? I get that there's some stuff with fluid flow but it doesn't really stick that well, especially when it comes to surface orientation.
Is there any surefire way to figure out the orientation of a surface? And is there any sort of intuition behind that or surface integrals?
The surface integral of a vector field, $F$ over a surface $S$ (or flux as it is called) is, as stated above, the net flow of fluid through the surface. The purpose of orientation is to simply indicate which side of the surface is the "positive" side. For instance, if I calculate flux to be +10, this means there is a net movement of 10 units of fluid towards whichever side of the surface is indicated as the positive side. The answer would be -10 if the orientation was reversed (since the "positive" side is now losing 10 units of fluid).
If you are asked to find the flux of $F$ over $S$, they have to tell you the orientation of $S$ in the question. For instance
"Find the flux of $F(x,y,z) = \langle 2xz,z-y,y^3 \rangle$ DOWNWARD through the section of the plane $x+y+z=6$ in the first octant."
In this question, the region under the plane is the positive side, and a positive flux would indicate a net movement of fluid downward through the plane. A negative answer indicates a net upward movement of fluid. So, how do you figure out orientation for a surface? You don't. It's usual stated in the question. In some cases they don't state orientation because they will accept either the positive or negative answer.
Some theorem's such as Stokes' and Gauss' Divergence Theorem require that the surface in question has a particular orientation. Stokes' theorem for instance, allows us to calculate a line integral along a closed curve by first choosing any surface enclosed by this curve. If the curve is traversed counterclockwise as viewed from above, the orientation of the surface must be "Upward" to use this theorem. So, whatever surface you choose, it's normal vector must point upward. In this case, you are the one choosing the surface so you so have to figure out the orientation yourself.
I should finally point out that I am assuming you are only working with surfaces in $R^3$. Orientation of a surface in $R^n$ (or hypersurfaces in $R^n$) is a very difficult concept since these are not real world objects that you can look at and decide the orientation of. Also, some 2d surfaces such as a Möbius strip, have no orientation since they only have one side.