Monty has a new game it's like his old one but now there are no goats just one car hiding behind one of three doors and this time he doesn't know where the car is.
To play you pick one of the three doors. Monty now opens one of the other doors chosen at random. If it's the car then you have lost and the game is over if not you get to choose if you want to change your mind or not and the door you choose is opened. If the car is standing behind it, it's yours to drive away and keep.
The questions.
What's the probability of the game getting to the final round.
What's the probability of the game getting to the final round and you win the car if you switch.
What's the probability of the game getting to the final round and you win the car if you don't switch.
My initial thoughts:
You have $\frac{1}{3}$ probability of picking the car in the first round so there is a $\frac{2}{3}$ probability that the host has a chance of picking the car meaning that $\frac{1}{3}$ of games finish on the second round. So $\frac{2}{3}$ of games reach the final round and whether you swap or not you have a $\frac{2}{3} \cdot \frac{1}{2} = \frac{1}{3}$ probability of winning.
However, It's possible to list all possible games making all possible assumptions of winning door and both the contestants and the hosts choices. When I do this I find there are only 30 possible games.
80% of which get to the final (third) round and I win 40% of the time if I swap and 40% of the time if I don't swap.
Which set of results is correct? And what's wrong with the flawed argument?

The flaw is in your 80%/40%/40%. You are correct in that if you write out all the possible paths, 20% of them will end after the second round. But that is not equal to the probability that path will occur. Assuming that each potential path of events is equally probable is a very common fallacy in calculating probabilities.
Here's a good example:
You flip a fair coin. If the first coin flip comes up heads, you flip again. If the first coin flip comes up tails, you stop. What's the probability of flipping 2 heads in a row?
The potential paths are:
T - game ends, you lose
HT - game ends, you lose
HH - game ends, you win
If all of these paths were equally likely, you'd have a $\frac 13$ chance of winning. However, they're not all equally likely. Tails coming up first (and thus ending the game) will happen $\frac 12$ of the time, whereas the other two paths will each happen $\frac 14$ of the time. So the probability of winning is $\frac 14$.