By a diagram of type $I$ ($I$ is also a category)in a category $C$, we mean a functor $F:I\longrightarrow C$.
Now, let’s assume we have an adjunction $F:C\longrightarrow D$ and $G:D\longrightarrow C$ such that $F\dashv G$.
With these data, how one can define the transpose of a diagram? Is there a kind of reverse operation?
I have some intuition that what the transpose of a diagram mean, but it is not so clear.

If $f:Fc\to d$ is an arrow in $D$, then what's usually called its transpose is the morphism $f^\flat:c\to Gd$ in $C$ obtained through the natural isomorphism coming from the adjunction:
$$D(c,Gd)\cong C(Fc,d)$$
Naturality of this bijection is characterized by saying that every left square as below commutes iff the right square commutes. This is like saying that the right square is the transpose of the left one and vice-versa.
While the transpose a generic diagram remains undefined (and I'm unsure there is such a concept), I believe this encodes all cases where you may want to tranpose through an adjoint. For instance, now we can take complicated diagrams in $D$ such as
and tranpose it to $C$, obtaining
All images were taken from Chapter 4 of Category Theory in Context.