Let $S$ be a polynomial ring over a field. Let $I$ be a homogeneous parameter ideal of $S.$ Observe that $S/I$ is an Artinian local ring, so it is Cohen-Macaulay, and it is finitely generated as an $S$-module. Even more, the projection of $S$ onto $S/I$ maps the homogeneous maximal ideal of $S$ onto the maximal ideal of $S/I,$ hence there exists a canonical module of $S/I.$ Explicitly, it is $\operatorname{Ext}_S^{\dim S}(S/I, S).$ One can find this canonical module by writing a (finite) minimal free resolution of $S/I$ as an $S$-module; applying $\operatorname{Hom}_S(-, S)$; and taking cohomology.
Let $S = \Bbb Q[x_1, \dots, x_5]$ and $I = (x_1 x_3, x_1 x_4, x_2 x_4, x_2 x_5, x_3 x_5) + (x_i^2 \mid 1 \leq i \leq 5).$ (One might recognize this as the sum of the Stanley-Reisner ideal of the five-cycle and the ideal generated by the squares of all of the variables.) I am attempting to use Macaulay2 to express the canonical module of $S/I$ as a quotient of a free $S$-module. Unfortunately, when I use the command Ext^5(S^1/I, S^1) in Macaulay2, it produces the following output that I am unable to interpret.
cokernel {-7} | x_5 x_4 x_2 0 x_3 0 0 0 0 0 0 0 0 0 0 x_1 0 0 0 0 |
{-7} | 0 0 0 x_5 -x_4 x_3 x_2 0 0 x_1 0 0 0 0 0 0 0 0 0 0 |
{-7} | 0 0 0 0 0 0 0 x_5 x_3 -x_2 x_1 x_4 0 0 0 0 0 0 0 0 |
{-7} | 0 0 0 0 0 0 0 0 0 0 0 x_5 x_4 x_3 x_1 0 0 x_2 0 0 |
{-7} | 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 x_5 x_4 -x_3 x_2 x_1 |
If I am correct, {-7} refers to the degree of the generators as a graded homomorphism; however, I'm not sure how this matrix $A$ is acting. Considering that this is a $5 \times 20$ matrix with entries in $S,$ I believe that this is acting by left-multiplication on the column vectors of $S^{\oplus 20},$ but I am not sure what a vector there looks like.
I have searched extensively for an interpretation of this output in the Macaulay2 documentation, but I have not found anything to settle my question. Ultimately, if I can decipher the output $\operatorname{cokernel}(A),$ then I would like to use the fact that $\omega_{S/I} = \operatorname{Ext}_S^5(S/I, S) = S^{\oplus 5} / \operatorname{coker}(A)$ is the canonical module of $S/I$ to determine the idealization of $\omega_{S/I}$ over $S.$ I would appreciate any insight or suggestions.
I am not sure if this will clear your confusion, but let me just go through some of what you say in your post.
First, notice that if $\Delta$ is some abstract simplicial complex over a set $X$, then the Stanley--Reisner ideal $I_\Delta$ is generated by the square-free monomials $x_{i_1}\cdots x_{i_k}$ where $\{i_1,\ldots,i_k\}$ is not in $\Delta$. If you take the $5$-cycle to be $12,23,34,45,51$, then what you wrote is somewhat the opposite of this, though if you remove the squares you will get the SR-ideal for the cycle $13524$,
For the resolutions. You can ask M2 to tell you what the resolution of $I$ as an $S$ module looks like, and then ask for the transpose of the $5$th differential:
Thus, you can see that the matrix that computes $\mathrm{Ext}^5_S(S/I,S)$ is the above, I assume the one that M2 gave you is obtained from this one by some elementary operations. At any rate, you compute this module as the quotient of $S^5$ by the image of this matrix.