I have some simple questions about scheme theory which are not clear in my mind :
$1)$ What is the difference between a scheme $X$ or, a $ \mathrm{Spec} \mathbb{Z} $ - scheme : $ X $, and a $ Y $ - scheme $ X $ or a scheme $ X $ over a scheme $ Y $ ? Who's big and general ?.
$ 2) $ What is the difference between a scheme $ X $ and a scheme which takes the form : $ X(L) = \mathrm{Hom}_k ( k[T_1 , \dots , T_n ] / ( P_1 , \dots , P_r ) , L ) $ $ \simeq \{ (x_1 , \dots , x_n ) \in L^n \ \mathrm{t.q.} \ P_1 (x_1 , \dots , x_n ) = ... = P_r ( x_1 , \dots , x_n ) = 0 \} $ ?
Who's big and general ? $ L $ is an extension of the base field $ k $.
$ 3) $ If $ X $ is an integral scheme of finite type, over $\mathbb{Q}$, then $ X(\mathbb{Q} ) $ is a $ \mathbb{Q} $ - scheme, and $ X( \mathbb{C} ) = X $, right ? why are $ X(\mathbb{Q}) $ an algberaic variety and $ X(\mathbb{C} ) $ a complex analytic variety ? When $ X $ is more general than an integral scheme of finite type over $\mathbb{Q}$, what is the difference between $ X $ and $ X( \mathbb{C} ) $ ? In other words, How can we construct, or what is the nature of a point $ x \in X \backslash X( \mathbb{C} ) $ ?
Thanks in advance for your answers and for your patience. :-)
1) Let $Y$ be any scheme. A $Y$-scheme $X$ is, technically, a morphism of schemes $X\to Y$. It might be helpful to consider two different ideas here: firstly, if $Y = \text{Spec}(k)$ for some field $k$, then topologically $Y$ is just a point. We can then imagine the $Y$-scheme $X\to Y$ as some geometric object projecting down onto the point. If $Y$ is more general than a point (say, e.g. $Y = \mathbb{A}_k^1$ is the affine line over $k$), then we can imagine $X\to Y$ as a family of fibers varying over the points of $Y$. Since $\text{Spec}(\mathbb{Z})$ is the terminal object in the category of schemes, there is a unique morphism $Y\to\text{Spec}(\mathbb{Z})$ for every $Y$. Therefore every $Y$-scheme $X\to Y$ is naturally a scheme over $\mathbb{Z}$ (an "absolute scheme") via $$X\to Y\to\text{Spec}(\mathbb{Z})$$ However, I would say that it is more general to be able to consider constructions working over any base scheme $Y$, because these can always be "base-changed" by another morphism of schemes.
2) If you mean this in a functorial sense then they are two aspects of the same thing. Every scheme $X$ over a ring $R$ determines a functor of points which, due to glueing, can be defined as a covariant functor from the category of $R$-algebras to the category of sets. When $k$ is a field (and also an $R$-algebra), the set $X(k)$ corresponds to the points of the topological space $X$ whose residue field is contained in $k$. But it's important to note that there are other $R$-algebras $A$ that aren't fields where $X(A)$ doesn't correspond to "typical" points.
3) This isn't quite right. $X(\mathbb{Q})$ and $X(\mathbb{C})$ aren't schemes - they're just identifiable with subsets of its points (more traditionally, you can think of them as points having coordinates in those fields). But $X$ also has non-closed points that [don't live in $X(k)$ for any field $k$] edit: live in much bigger transcendental extensions. When $X$ is an integral scheme of finite type over $\mathbb{Q}$, there is also a generic point $\xi$ that is not closed, and corresponds to the irreducible closed subscheme $X$ itself. You can think of $\xi$ as a point "spread out over the shape of $X$". This point is not in $X(\mathbb{C})$.
Edit: Along with the great references given in the other answer by @paf, a fun and informal introduction to the functor of points view is given in this blog post by Lieven le Bruyn. I would say that getting to grips with viewing schemes functorially has vastly improved my understanding of them, especially when you work in "arithmetic" situations.