For instance, on Boyd and Vandenberghe's Convex Optimization, the ellipsoid is defined as follows
$$\left\{ x \mid(x-x_c)^T P^{-1} (x-x_c) \leq 1 \right\}$$
I've also seen that on other books, too. I don't know what difference it makes using $P^{-1}$ instead of just using $P$, since both are positive definite (PD) matrices. There must be some reason why most books insist on using the inverse.
I guess this is for consistency with the ball notation $B(x_c,r)=\{x: \|x-x_c\|\le r\}$. If we define $\mathcal{E}(x_c,P)=\{x:(x-x_c)^TP^{-1}(x-x_c)\le 1\}$, then $$ \mathcal{E}(x_c,r^2I)=B(x_c,r). $$ If we instead define $\widetilde{\mathcal{E}}(x_c,P)=\{x:(x-x_c)^TP(x-x_c)\le 1\}$, then we would have $$ \widetilde{\mathcal{E}}(x_c,r^2I)=B(x_c,1/r). $$