Let $A$ be $\{a,b,c\}$. Let the relation $R$ be $\{(a,a),(c,c),(a,b),(b,a)\}$.
Since $(a,b) \land (b,a) \to (a,a)$ this shows transitivity. Furthermore $(c,c)$ doesn't have anything else it relates to so, therefore, you can assume the premises are false as well as the conclusion being false so, therefore, showing transitivity.
It seems the question has been answered in comments, but just to make sure it has an answer:
Let $x=b$, $y=a$, and $z=b$. Then $x \mathrel{R} y$ and $y \mathrel{R} z$. But $x \mathrel{R} z$ is equivalent to $b \mathrel{R} b$, which is not true. So $R$ is not transitive.